How can I run the Trekker bioinformatics pipeline?

You can locally install and execute the pipeline on a Linux server or with HPC (high performance computing). The pipeline can also be executed in a ­push-button fashion on our cloud platform. You can access more details on both methods in our knowledge [...]

How is Trekker data analyzed?

W #_msocom_1 e provide a bioinformatics pipeline that combines the single-nuclei sequencing output with the spatial barcode information from the Trekker kit to position the nuclei recovered from single-nuclei sequencing onto a spatial map. The pipeline can be downloaded from our knowledge [...]

What single-cell platforms are compatible with the Trekker kit?

C #_msocom_1 urrently, the Trekker kit is compatible with 10X Chromium Next GEM Single Cell 3’ v3.1, 10X Chromium GEM-X Single Cell 3’ v4, and BD Rhapsody Whole Transcriptome Analysis kits. Additional Trekker technology users have successfully demonstrated compatibility with other single-cell workflows, including 10X Chromium Multiome and ones from Scale Biosciences and Fluent Biosciences. Please [...]

What instrument do I need to get started with the Trekker kit?

A simple UV lamp fixture, purchased as a starter [...]

What is the Trekker kit?

The Trekker reagent kit converts single-cell data into a spatial map by spatially tagging nuclei from a tissue section before running them on a typical single-cell sequencing platform. See product page #_msocom_1 for more details. [...]