What do I do if the FORMATCONVERT step fails with the following error?
What do I do if the FORMATCONVERT step fails with the following error?
FORMATCONVERT scanpy related error
Failure mode
Solution
Add the following 2 lines at the start of the formatconvert.py script (available in curioseeker-2.0.0/bin/) and resume the pipeline run.
(Please make sure to add these two lines above the import scanpy as sc line - screenshot below)
