What are the default parameters (e.g., the number of principal components used and the resolution for finding clusters) to reproduce the plots in the HTML report from the Seeker Primary Analysis Pipeline?
What are the default parameters (e.g., the number of principal components used and the resolution for finding clusters) to reproduce the plots in the HTML report from the Seeker Primary Analysis Pipeline?
You can find the exact parameters used in the Seeker pipeline script seeker*/bin/analysis.R line 54-85.