What tool was used to generate the UMAP by the Seeker Primary Analysis Pipeline, and how many principal components were used?
What tool was used to generate the UMAP by the Seeker Primary Analysis Pipeline, and how many principal components were used?
We used the RunUMAP() function in the Seurat R package on the top 30 principal components (PC). If there were fewer than 30 PCs identified, we used all identified PCs.